From Mellieha: Three Bay Cruise including the Blue Lagoon

A Deep Dive into the Mellieha Three Bay Cruise — An Authentic Malta Experience

If you’re looking for a relaxing day on the water that combines scenic beauty, excellent value, and some well-chosen swimming stops, this boat cruise from Mellieha might just be what you need. Operating around the islands of Comino and Gozo, it promises up to six hours of sun, sea, and spectacular views. The boat departs from Marfa Bay, with a friendly crew guiding you through turquoise lagoons, hidden caves, and peaceful bays—a real treat for those who love being on the water and exploring Malta’s coastal treasures.

What I particularly like about this experience is how intimate it feels despite being a popular tour — the boat is smaller than those giant cruise ships, so you don’t get lost in a crowd. Plus, the guides are known for their helpfulness and friendly attitude, making it easier to relax and enjoy the day. The price, at just $46 per person, seems fair considering the stops and the quality of the scenery. However, one important detail travelers should keep in mind is the need to secure a government-issued access pass for the Blue Lagoon if they plan to step ashore, which requires planning ahead.

A possible drawback? The Blue Lagoon can be very busy in peak season, which may disappoint those expecting a quiet, postcard-perfect setting. If avoiding crowds is your priority, you might prefer staying on the boat at certain stops or visiting early in the day. Still, the overall experience offers enough variety and beautiful spots to make it well worth the price.

Key Points / Takeaways

• Small, Friendly Boat: The cruise uses a cozy vessel that provides a more personal feel than larger tour boats.
• Blue Lagoon Access: The highlight stop, with a 1.5-hour swim, snorkeling, and relaxing opportunity, but travelers must secure an access pass beforehand.
• Stunning Lagoons: Crystal Lagoon and Alfa Rock Bay offer sheltered waters, dramatic cliffs, and vibrant marine life.
• Expert Guides: Several reviews praise guides like Danny and Chandler for their helpfulness and insights.
• Flexible Options: You can choose to stay on the boat or hop onto the shore at Blue Lagoon, depending on your mood and crowd levels.
• Good Value: For around $46, you get multiple swim stops, scenic cruising, and a memorable day on the water.

Exploring the Itinerary: The Heart of the Experience

The adventure begins at Marfa Bay, where you meet the friendly staff next to the Dive Vision Malta Snorkel & Diving Centre. From there, the vessel—named Pegasus—sets out along Malta’s coast, offering a chance to see the island from a different angle. The first major stop is the Blue Lagoon on Comino, a postcard image of bright cyan water and white sand, famed for its clarity and marine life. Here, the boat will stay anchored for about an hour and a half, giving ample time for swimming and snorkeling. Many reviews mention that the staff, like Dany and Chandler, are attentive, making sure everyone gets the best experience.

Some travelers, as noted by one reviewer, skip stepping ashore at the Blue Lagoon to avoid the crowds — instead, they enjoy jumping directly from the boat into the water. This flexibility can be a real plus, especially during busy times when the shore gets packed with day-trippers. The Blue Lagoon’s popularity means it’s a visual highlight, but also a potential source of disappointment if expectations of solitude are not met.

After the Blue Lagoon, the cruise head to Crystal Lagoon on the west side of Comino. With roughly an hour here, snorkelers and divers have the chance to explore sea caves and marvel at the sheltered turquoise waters surrounded by cliffs. The reviews consistently praise the spectacular scenery and the opportunity to snorkel in such a tranquil environment, away from the crowds.

The third stop takes you to Alfa Rock Bay on Gozo — a quieter, lesser-known gem where a small pebble beach and clear cove await. This spot is perfect for those seeking peace and a chance to soak up the Gozitan countryside without the hustle of tourist hotspots. The hour-long stay here offers swimming, relaxing, and appreciating the natural beauty.

As the tour winds down, the boat passes by notable sights like the Santa Maria Caves and the Elephant Head rock formation— ideal for photo enthusiasts. The entire cruise is designed to give you a taste of Malta’s diverse coastal scenery, with the chance to swim, snorkel, or simply soak up the sun.

What to Expect on the Day

The experience lasts about six hours, with the boat leaving in the morning (exact times vary). The group size is generally small, making it easier to relax and chat with guides and fellow travelers. The crew is well-regarded for their hospitality and knowledge, giving insights into each location and making sure everyone stays safe during swimming and snorkeling.

The boat is equipped with toilet facilities and a shower—useful after multiple dips in the sea. There’s a small bar serving snacks and drinks, which are reasonably priced. Bringing your own snacks and cash is recommended, especially for a longer day in the sun. To maximize comfort, pack essentials like sunhat, sunglasses, sunscreen, and a towel. If you’re prone to seasickness, consider taking precautions, as the boat does travel between several lagoons and bays.

A key logistical note is the need to pre-book an access pass for the Blue Lagoon if you plan to leave the boat and walk ashore. This government regulation, effective from May 2025, aims to limit crowds and protect the environment. The pass must be booked online, so a bit of planning ahead is necessary.

Who Should Consider This Cruise?

This trip is perfect for travelers who love being on the water, enjoy swimming and snorkeling, and are looking for a day of scenic relaxation rather than a hectic sightseeing tour. It appeals especially to those who prefer smaller boats with a more personal touch, and to anyone wanting to see some of Malta’s most beautiful lagoons without the hassle of organizing separate transport or activities.

It’s well-suited for families, couples, or small groups who enjoy spending time outdoors and don’t mind sharing the boat with a few others. However, it’s not ideal if you have mobility issues or dislike swimming in open water. Also, keep in mind the importance of securing the Blue Lagoon pass in advance if you want to step ashore.

The Sum Up: Is This Tour Worth Your Time?

For the price of around $46, this cruise offers a well-rounded look at Malta’s coastal beauty. The stops are carefully chosen, with stunning spots like the Blue Lagoon and Crystal Lagoon providing perfect settings for swimming and photos. The guides receive high praise for their friendliness and helpfulness, which elevates the experience from just a boat ride to a memorable, authentic adventure.

The tour shines brightest for those who value a relaxed pace, gorgeous scenery, and the chance to cool off in turquoise waters. While crowds can be a concern at Blue Lagoon, many travelers find that the overall experience surpasses this, especially with the option to stay on the boat or explore lesser-known spots like Alfa Rock Bay.

This cruise balances affordability, scenic highlights, and a friendly atmosphere, making it an excellent choice for a laid-back day on the Maltese waters. If you’re eager to see Malta from the sea, swim in crystal-clear lagoons, and relax in a friendly environment, this tour could become a highlight of your trip.

FAQ: Your Practical Questions Answered

Do I need to book the Blue Lagoon access pass in advance?
Yes, starting in May 2025, you must pre-book a government-issued access pass online if you want to step ashore at the Blue Lagoon. The passes are limited, so plan ahead to avoid missing out.

Does the tour include hotel pickup?
No, the activity begins at the Marfa Jetty across from the Riviera Spa Resort. Check-in is at the boat named Pegasus near the Dive Vision Malta Snorkel & Diving Centre.

What should I bring for the trip?
Bring essentials like sunglasses, sun hat, swimwear, towel, sunscreen, cash, and motion sickness prevention if needed. Also, consider renting snorkeling gear on board or bringing your own.

Can I stay on the boat during all stops?
Yes, you have the flexibility to relax on the boat instead of stepping onto the shore, especially at busy stops like Blue Lagoon.

Is the cruise suitable for children or people with mobility issues?
It’s generally suitable for families, but not recommended for those with mobility impairments or those prone to seasickness.

How long does each stop last?
Blue Lagoon: about 1.5 hours, Crystal Lagoon: 1 hour, Alfa Rock Bay: 1 hour. The duration allows plenty of time for swimming, relaxing, or exploring.

Are food and drinks included?
No, there is a small bar selling snacks and beverages at reasonable prices, but bringing your own food is recommended for longer stays.

What happens if the weather turns bad?
The provider reserves the right to modify the itinerary based on weather conditions, but the overall experience is typically weather-dependent rather than canceled.

This boat cruise from Mellieha offers a great way to experience Malta’s beautiful coastlines and lagoons in a relaxed, friendly setting. It’s a well-reviewed, affordable, and scenic day trip that many travelers find worth every euro — or dollar!